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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs76513183 chr11:60211468 C/T PRDM6 chr5:122424816-122529960:+ 0.58 5.88 7.83E-9 Box Plot
THCA rs7651639 chr3:179568847 C/T PHF11 chr13:50069746-50103123:+ 0.22 6.09 2.32E-9 Box Plot
THCA rs76562957 chr8:9285205 C/T SGK223 chr8:8175258-8244008:- 0.36 6.15 1.62E-9 Box Plot
THCA rs76563459 chr10:88937385 G/C FAM35B chr10:46897641-46939143:+ 0.37 7.33 9.89E-13 Box Plot
THCA rs76569880 chr4:176834059 C/A ADAMTS6 chr5:64444563-64777747:- -0.31 -5.9 6.97E-9 Box Plot
THCA rs765731 chr8:11121498 T/A SGK223 chr8:8175258-8244008:- 0.36 7.11 4.25E-12 Box Plot
THCA rs7657783 chr4:61519757 T/A SCLY chr2:238969530-239008054:+ 0.46 5.98 4.45E-9 Box Plot
THCA rs7657801 chr4:22044236 C/T ZFPM1 chr16:88519725-88603424:+ 0.24 6.23 9.97E-10 Box Plot
THCA rs7657801 chr4:22044236 C/T ZNF628 chr19:55987699-55995854:+ 0.26 6.19 1.26E-9 Box Plot
THCA rs7659851 chr4:167004871 A/T LSM3 chr3:14219858-14242619:+ 0.27 5.89 7.46E-9 Box Plot
THCA rs766373 chr9:141005772 A/G TUBB4Q chr4:190903679-190906024:- -0.4 -6.02 3.45E-9 Box Plot
THCA rs766375 chr9:141005820 C/T TUBB4Q chr4:190903679-190906024:- 0.41 5.93 5.93E-9 Box Plot
THCA rs766432 chr2:60719970 C/A HBG1 chr11:5269313-5271122:- -0.46 -6.75 4.24E-11 Box Plot
THCA rs76671315 chr5:46390973 G/A LOC647121 chr1:121260910-121313686:+ -0.36 -7.88 2.18E-14 Box Plot
THCA rs7673846 chr4:174012619 T/C GALNTL6 chr4:172733405-173962710:+ -0.35 -6.64 8.54E-11 Box Plot